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Journal Publications

  1. Hyundoo Jeong† and Navadon Khulnergit†, “Effective single-cell clustering through ensemble feature selection and similarity measurements," Accepted to Computational Biology and Chemistry.

  2. Yijie Wang†, Hyundoo Jeong†, Byung-Jun Yoon, and Xiaoning Qian, “ClusterM: A scalable algorithm for computational prediction of conserved protein complexes across multiple protein interaction networks," Accepted to BMC Genomics.

  3. Chun-Chi Chen, Hyundoo Jeong, Xiaoning Qian, and Byung-Jun Yoon, “TOPAS: network-based structural alignment of RNA sequences," Bioinformatics, vol. 35, no. 17, pp. 2941–2948, Sept. 2019. [Software]

  4. Noushin Ghaffari†, Osama A. Arshad†, Hyundoo Jeong†, John Thiltges, Michael F. Criscitiello, Byung-Jun Yoon, Aniruddha Datta, Charles D. Johnson, “Examining de novo transcriptome assemblies via a quality assessment pipeline,” IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 15, no. 2, pp. 494-505, 2018. †Equally contributed [Supplementary material]

  5. Hyundoo Jeong, Xiaoning Qian, and Byung-Jun Yoon, “CUFID-query: random walk based network querying through network flow estimation,” BMC Bioinformatics, 18(Suppl 14):12, 2017.

  6. Hyundoo Jeong and Byung-Jun Yoon, “SEQUOIA: Significance enhanced network querying through context-sensitive random walk and minimization of network conductance,” BMC Systems Biology, 11(Suppl 3):20, 2017. [Software]

  7. Hyundoo Jeong, Xiaoning Qian, and Byung-Jun Yoon, “Effective comparative analysis of protein-protein interaction networks by measuring the steady-state network flow using a Markov model,” BMC Bioinformatics, 17(Suppl 13):395, 2016 . [Software]

  8. Hyundoo Jeong and Byung-Jun Yoon, “Accurate multiple network alignment through context-sensitive random walk,” BMC Systems Biology, 9(Suppl 1):S7, 2015 [Supplementary material]

  9. Hyundoo Jeong and Byung-Jun Yoon, “Effective estimation of node-to-node correspondence between different graphs,” IEEE Signal Processing Letters, vol. 25, no. 6, pp. 661-665, June 2015.

Conference Publications

  1. Hyun-Myoung Woo†, Hyundoo Jeong†, and Byung-Jun Yoon “Comprehensive updates in network synthesis models to create an improved benchmark for network alignment algorithms,” 9th ACM-BCB, Washington, DC, Oct., 2018. †Equally contributed

  2. Hyundoo Jeong and Byung-Jun Yoon “SEQUOIA: Significance enhanced network querying through context-sensitive random walk and minimization of network conductance,” 7th ACM-BCB, Seattle, WA, Oct., 2016.

  3. Hyundoo Jeong and Byung-Jun Yoon, “Identifying molecular complexes in biological networks through context sensitive network querying,” 6th ACM-BCB, Atlanta, GA, Sept. 9, 2015.

  4. Hyundoo Jeong and Byung-Jun Yoon, “Accurate multiple network alignment through context-sensitive random walk,” Asia Pacific Bioinformatics Conference (APBC), Hsinchu, Taiwan, Jan. 2015. invited to BMC Systems Biology

  5. Noushin Ghaffari†, Osama A. Arshad†, Hyundoo Jeong†, John Thiltges, Michael F. Criscitiello, Byung-Jun Yoon, Aniruddha Datta, and Charles D. Johnson, “De novo transcriptome assemblies and annotation for pacific whiteleg shrimp,” IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS), Atlanta, GA, USA, Dec. 2014. †Equally contributed

  6. Hyundoo Jeong and Byung-Jun Yoon, "A novel context-sensitive random walk model for estimating node correspondence between two biological networks,’’ 5th ACM-BCB, Newport Beach, CA, USA, Sept. 2014.

  7. Hyundoo Jeong, Jae Hong Lee, and Hanbyul Seo, “Resource allocation for uplink multiuser OFDM relay networks with fairness constraints,” in Proc. of IEEE Vehicular Technology Conference (VTC) 2009 Spring, Barcelona, Spain, Apr. 2009.